Developed by Prof. Sekar's group

Contact Person : Professor K. Sekar

  • An algorithm for conducting hypotheses testing based on Neymann-Pearson Lemma. I. The case of continuous univariates
    S.Parthasarathy and K. Sekar.
    CURR. SCIENCE (1992). 63(11), 677-681.

  • A Fast Pattern Matching Algorithm
    S.S.Sheik, S.K.Agarwal, A.Poddar, N.Balakrishnan and K. Sekar.
    J. CHEM. INF. and COMP. SCIENCES (2004). 44(4), 1251-1256.   

  • Analysis of string-searching algorithms on biological sequence databases
    S.S.Sheik, Sumit K.Aggarwal, A.Poddar, B.Sathiyabhama, N.Balakrishnan and K. Sekar.
    CURR. SCIENCE (2005). 89(2), 368-374.

  • TVSBS: A fast exact pattern matching algorithm for biological sequences
    Rahul Thathoo, Ashish Virmani, S.Sai Lakshmi, N.Balakrishnan and K. Sekar.
    CURR. SCIENCE (2006). 91(1), 47-53.

  • An Algorithm to find all identical internal sequence repeats
    Nirjhar Banerjee, N. Chidambarathanu, Daliah Michael, N. Balakrishnan and K. Sekar.
    CURR. SCIENCE (2008). 95(2), 188-195.

  • Algorithm to find distant repeats in a single protein sequence
    Nirjhar Banerjee, R. Sarani, C. Vasuki Ranjani, G. Sowmiya, Dailah Michael, N. Balakrishnan and K. Sekar.
    BIOINFORMATION (2008), 3(1), 28-32.  

  • An Algorithm to find similar internal sequence repeats
    Nirjhar Banerjee, N. Chidambarathanu, R. Sabarinathan, Daliah Michael, C. Vasuki Ranjani, N. Balakrishnan and   K. Sekar
    CURR. SCIENCE (2009). 97(9), 1345-1349.

  • An Algorithm to find distant repeats in a pair of protein sequences
    R. Sabarinathan, Nirjhar Banerjee, N.Balakrishnan and K. Sekar
    PATTERN RECOGNITION LETTERS (2010). 31, 2161-2169.

  • An Algorithm to find all identical motifs in multiple biological sequences
    Ashish Kishor Bindal, R. Sabarinathan, J. Sridhar, D. Sherlin and K. Sekar
    LECTURES NOTES IN BIOINFORMATICS (2010). 6282, 137-148.

  • AS3P: A fast Algorithm to Search Structurally Similar Proteins
    S. Rohit, R. Akshaya, R. Sabarinathan, M.Kirti Vaishnavi, D. Sherlin, M. Gurusaran and K. Sekar
    ICIC (3). (2012). 166-173.

  • An algorithm to find all palindromic sequences in proteins
    N. Prasanth, M. Kirti Vaishnavi and K. Sekar
    J. BIOSCIENCES (2013). 38(1), 173-177.  

  • Do we see what should we see? Describing the non-covalent interactions in protein structures including precision
    M. Gurusaran, M. Shankar, R. Nagarajan, John R. Helliwell and K. Sekar
    IUCrJ (2014). Vol 1(1), 74-81. doi: 10.1107/s2052252513031485.

  • PlaneFinder: A methodology to find the best plane for a set of atoms involved in the metal coordination in the protein structures
    Janu Sahana J, Sriraghav Srinivasan, Vijeth T A, Nagarushyanth Tummala, Santhosh Rajendran, Daliah Michael, Sameer Ahmed Z, Nisha K P R, Jeyakanthan Jeyaraman and K. Sekar
    J. APPL. CRYST.(2018). Vol 51, 1251-1256. doi:10.1107/S1600576718008282.

  • Finding identical sequence repeats in multiple protein sequences: An algorithm
    Vikas Kumar Maurya, Madhumathi Sanjeevi, Chandrasekar Narayanan Rahul, Ajitha Mohan, Dhanalakshmi Ramachandran, Rashmi Siddalingappa, Roshan Rauniyar and K. Sekar
    Journal of Biosciences (2024). Vol 49, No.41. doi:10.1007/s12038-023-00410-x.