Public databases hosted in the centre

Contact Person : Professor K. Sekar
In-house derived databases

Contact Person : Professor K. Sekar
  • CADB: Conformational Angles DataBase of Proteins
    S.S. Sheik, P. Ananthalakshmi, G. Ramya Bhargavi and K. Sekar
    NUCL. ACIDS RES.(2003), 31(1), 448-451.  
    and
    CADB - 2.0: Conformation Angles DataBase
    K.Samaya Mohan, S.S.Sheik, J.Ramesh, B.Balamurugan, M.Jeyasimhan,C.Mayilarasi and K. Sekar
    ACTA CRYST (2005). D61, 637-639.  
    and
    CADB - 3.0: Conformation Angles DataBase
    K.Gopalakrishnan, S.S.Sheik, C.Vasuki Ranjani, A.Udayakumar and K. Sekar
    PROTEIN AND PEPTIDE LETTERS (2007). 14, 665-668.  
    http://cluster.physics.iisc.ac.in/cadb/

  • SSEP: Secondary Structural Elements of Proteins
    V. Shanthi, P. Selvarani, Ch. Kiran Kumar, C.S.Mohire and K. Sekar
    NUCL. ACIDS RES.(2003), 31, 3404-3405.  
    and
    SSEP - 2.0: Secondary Structural Elements of Proteins
    B. Balamurugan, K. Samaya Mohan, J. Ramesh, M.N.A. Md Roshan, K. Sumathi and K. Sekar
    ACTA CRYST (2005). D61, 631-636.  
    http://cluster.physics.iisc.ac.in/ssep/

  • THGS: A web based database of Transmembrane Helices in Genome Sequences
    S.A. Fernando, P. Selvarani, Soma Das, Ch. Kiran Kumar, Sukanta Mondal, S. RamaKumar and K. Sekar
    NUCL. ACIDS RES.(2004), 32, D125-D128.  
    http://pranag.physics.iisc.ac.in/thgs/

  • LySDB: Lysozyme Structural Database
    K. Samaya Mohan, Soma Das, C. Chockalingam, V. Shanthi and K. Sekar
    ACTA CRYST.(2004), D60, 597-600.  
    http://iris.physics.iisc.ac.in/lysdb/

  • SMS: Sequence, Motif and Structure
    B.Balamurugan, M.N.A.Md.Roshan, Daliah Michael, M.Ambaree, S.Divya, H.Keerthana, M.Seemanthini and K. Sekar
    IN SILICO BIOLOGY.(2006), 6, 229-235.  
    and
    • SMS-2.0: An updated database to study the structural plasticity of short peptide fragments in non-redundant proteins
    Dheeraj Ravella, M. Uthayakumar, D. Sherlin, M. Shankar, Kirti Vaishnavi M and K. Sekar
    GENOMICS, PROTEOMICS AND BIOINFORMATICS (2012). 10(1), 44-50.  
    http://cluster.physics.iisc.ac.in/sms/

  • MIPS: Metal Interactions in Protein Structures
    Hemavathi K, Kalaivani Mani, UdayaKumar A, Sowmiya Govindaraj, Jeyakanthan Jeyaraman and K. Sekar
    J. APPL. CRYST (2010). 43, 196-199.
    http://dicsoft2.physics.iisc.ac.in/mips/

  • MLDB: Macromolecule Ligand DataBase
    Saravanan S.E, Karthi R, Sathish K, Kokila K, Sabarinathan R and K. Sekar
    J. APPL. CRYST (2010). 43, 200-202.
    http://dicsoft2.physics.iisc.ac.in/mldb/

  • Do we see what we should see? Describing the non-convalent interactions in protein structures including precision
    M. Gurusaran, M. Shankar, R. Nagarajan, John R Helliwell and K. Sekar
    IUCrJ (2014). 1(1), 74-8.   
    http://cluster.physics.iisc.ac.in/sbps

  • Streptococcus pneumoniae Genome Database (SPGDB): A database for strain specific comparative analysis of Streptococcus pneumoniae genes and proteins
    R. G. Swetha, D. K. K. Sekar, E. D. Devi, Z. Z. Ahmed, R. Sudha, K. Sekar and A. Anand
    GENOMICS (2014). 104, 582-586.   
    http://pranag.physics.iisc.ac.in/SPGDB/

  • Haemophilus influenzae Genome Database (HIGDB): A single point web resource for Haemophilus influenzae
    R. G. Swetha, D K K Sekar, Sudha Ramaiah, Anand Anbarasu and K. Sekar
    COMPUTERS IN BIOLOGY AND MEDICINE (2014). 55, 86-91.   
    http://bioserver1.physics.iisc.ac.in/HIGDB/

  • Ebolavirus Database(EDB): Gene and protein information resource for ebolaviruses
    Rayapadi Swetha, Sudha Ramaiah, Anand Anbarasu and K. Sekar
    Advances in Bioinformatics (2016) Article ID 1673284, 4 pages, doi:10.1155/2016/1673284.  
    http://bioserver1.physics.iisc.ac.in/EDB/

  • NIMS: A database on Nucleobase compounds and their Interactions in Macromolecular Structures
    R. Santhosh, S.N. Satheesh, M. Gurusaran, Daliah Michael, K. Sekar and J. Jeyakanthan
    J. APPL. CRYST (2016) 49, doi:10.1107/S1600576716006208, pages 1093-1098.
    http://iris.physics.iisc.ac.in/nims/

  • Melioidosis Database (MDB): A comprehensive web-based resource on Melioidosis and gene protein repository for Burkholderia pseudomallei
    Rayapadi Swetha, Sudha Ramaiah, Anand Anbarasu and K. Sekar
    J. BIOTECH Vol. 12 (1) (2017).
    http://bioserver1.physics.iisc.ac.in/MDB/

  • Diffraction precision index of macromolecular structures: A web based database
    R. Santhosh, E. Velayudham, Daliah Michael, Namrata Bankoti, P. Chandrasekaran, D. Karthikeyan, S. Pavithra, M. Gurusaran, K. P. R. Nisha, S.N. Satheesh, K. Rangachari, J. Jeyakanthan and K. Sekar
    RJLBPCS (2019). Vol 5(2), 126-133. doi: 10.26479/2019.0502.10.
    http://pranag.physics.iisc.ac.in/dpi_db

  • ACMS : A database of alternate conformations found in the atoms of main and side chains of protein structures
    R. Santhosh, P. Chandrasekaran , Daliah Michael, K. Rangachari, Namrata Bankoti, J. Jeyakanthan and K. Sekar
    J. APPL. CRYST. (2019). Vol 52, 910-913. doi: 10.1107/S1600576719006447..
    http://iris.physics.iisc.ac.in/acms/

  • MRPC: Missing Regions in Polypeptide Chains - A Knowledgebase
    Rajendran Santhosh, Namrata Bankoti, Padmashri Adgonda Malgonnavar, Daliah Michael, Jeyaraman Jeyakanthan and K. Sekar
    Journal of Applied Crystallography(2019). Vol 52, 1422-1426. doi: 10.1107/S1600576719012330
    http://cluster.physics.iisc.ac.in/mrpc/

  • IMRPS: Inserted and Modified Residues in Protein Structures: A Database
    Rajendran Santhosh, Namrata Bankoti, Gurudarshan Manickam, Jeyaraman Jeyakanthan and K. Sekar
    Journal of Applied Crystallography(2020)
    http://cluster.physics.iisc.ac.in/imrps/

  • NCSp: A novel search engine for the proteins involved in the Notch crosstalk signaling pathways
    Madhumathi Sanjeevi, Santhosh Rajendran, Dhanalakshmi Ramachandran, Chandrasekar Narayanan Rahul, Jeyaraman Jeyakanthan and K. Sekar
    Journal of Biosciences (2023). Vol 49, No.8. doi: 10.1007/s12038-023-00395-7.  
    http://bioserver3.physics.iisc.ac.in/cgi-bin/nccspd/

  • MyxoPortal: a database of myxobacterial genomic features
    Rayapadi G. Swetha, Benita S Arakal, Santhosh Rajendran, K. Sekar , David E. Whitworth, Sudha Ramaiah, Philip E. James, Paul G. Livingstone and Anand Anbarasu
    DATABASE - The Journal of Biological Databases and Curation (2024). doi: 10.1093/database/baae056.  
    http://dicsoft1.physics.iisc.ac.in/MyxoPortal/

  • MIPDS: A Comprehensive database on the Molecular Interactions in Protein Dimer Structures
    Madhumathi Sanjeevi, Santhosh Rajendran, Jeyakanthan Jeyaraman and K. Sekar
    Journal of Applied Crystallography(2024). Vol 57. doi: 10.1107/S1600576724007131.
    http://dicsoft1.physics.iisc.ac.in/mipds/