###### Department of Computational and Data Sciences

# Introduction to Scalable Systems

**Instructor**: Sathish Vadhiyar (www | email), Yogesh Simmhan (www | email) and Matthew Jacob (www | email)**Teaching Assistant**: Manasi Tiwari (email)**Course number**: DS221**Credits**: 3:1**Semester**: Aug, 2018**Lecture**: Tue/Th 1130AM-1PM*(First class: Aug 7, 1130AM)*

**Lab:***TBD***Room**: CDS 202

## Overview

This course covers computer systems topics that are essential for students engaging in computational and data sciences. It introduces topics on architecture, OS and data structures that may be new to students without a degree in Computer Science. Then it moves to more advanced topics on tree/graph data structures, HPC/GPGPU programming and Big Data platforms.

Some of the topics covered are: *Architecture: computer organization, single-core optimizations including exploiting cache hierarchy and vectorization, parallel architectures including multi-core, shared memory, distributed memory and GPU architectures; Algorithms and Data Structures: algorithmic analysis, overview of trees and graphs, algorithmic strategies, concurrent data structures; Parallelization Principles: motivation, challenges, metrics, parallelization steps, data distribution, PRAM model; Parallel Programming Models and Languages: OpenMP, MPI, CUDA; Distributed Computing: Commodity cluster and cloud computing; Distributed Programming: MapReduce/Hadoop model.*

This course is a precursor to more advanced courses like DS 295: Parallel Programming, and DS 256: Scalable Systems for Data Science, and includes topics from the earlier *DS 286: Data Structures and Programming* and *DS 292: High Performance Computing* courses.

## Pre-requisites

This is an introductory crash-course on computer systems, algorithms, HPC and Big Data platforms. So the pre-requisites are minimal: *Basic knowledge of computer systems, data structures and programming, and algorithms*. However, the course will have a rapid pace and students are expected to pick up the skills rapidly through self-learning.

## Grading Scheme

- Sessionals (50 points)
- 3 assignments – 10 + (15 + 5) = 30 points
- Two mid-Term exams – 2 x 10 = 20 points

- Terminal (50 points)
- 1 assignment – 20 points
- Final exam – 30 points

## Resources

- Parallel Computing Architecture. A Hardware/Software Approach. David Culler, Jaswant Singh. Publisher: Morgan Kauffman. ISBN: 981-4033-103. 1999.
- Parallel Computing. Theory and Practice. Michael J. Quinn. Publisher: Tata: McGraw-Hill. ISBN: 0-07-049546-7. 2002.
- Computer Systems – A Programmer’s Perspective. Bryant and O’Hallaron. Publisher: Pearson Education. ISBN: 81-297-0026-3. 2003.
- Introduction to Parallel Computing. Ananth Grama, Anshul Gupta, George Karypis, Vipin Kumar. Publisher: Addison Wesley. ISBN: 0-201-64865-2. 2003.
- An Introduction to Parallel Programming. Peter S Pacheco. Publisher: Morgan Kauffman. ISBN: 978-93-80931-75-3. 2011.
- Online references for OpenMP, MPI, CUDA
- Data Structures, Algorithms, and Applications in C++, 2nd Edition, Sartaj Sahni
- Lecture slides

## Tentative Schedule

*NOTE: Besides these lectures, there will be several lab sessions and tutorials as well. The schedule for these will be announced in class.*

**Architecture (7 lectures)***MJT, Starting Aug 7*- Computer organization including cache hierarchy, locality
*Assignment 1*

**Midterm Exam 1 (Aug 30)**

**Algorithms and Data Structures: (7 lectures/YS),***YS, Starting Sep 4*- Algorithmic analysis and Lists
- Basic Data Structures: Stacks, Queues, Trees
- Searching: Hashmap, Search trees
- Fundamentals of graphs
- Algorithmic Strategies
*Assignment 2 (posted online on 18 Sep, 2018)*

**Big Data Systems (3 lectures/YS)**- Introduction to Big Data, Spark programming model
- Big Data programming models: Spark Streaming and Giraph
*Assignment 3*

*Midterm Exam 2 (Oct 16)*

**Parallelization,***VSS, Starting Oct 18***Parallel Programming Models and Languages (4 lectures)**- Shared memory: OpenMP pdf
- Distributed Memory: MPI – pt2pt, collectives
- Online tutorial “MPI Complete Reference”. Google for it.

- GPUs: CUDA
- Further reading: Google for NVIDIA CUDA programming guide.

**Sample Parallel Algorithms (2 lectures)**- Prefix computations
- Graph algorithms
- Paper: A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L. Yoo et al. SC 2005. (Pages 1-7)
- Paper: Accelerating large graph algorithms on the GPU using CUDA. Harish and Narayanan. HiPC 2007. (Page 5-8)
- Prim’s MST, Dijikstra’s MST, Parallel APSP using Dijikstra’s SSSP: Introduction to Parallel Computing by Grama et al. – Pages 432-440
- Coloring: Maximal Independent sets by Luby – “Introduction to Parallel Computing” Book
- Coloring: Paper “Scalable parallel graph coloring algorithms” by Gebremedhin, Manne.

- Linear algebra
- Paper: Towards Dense Linear Algebra for Hybrid Accelerated Manycore Systems. Parallel Computing. 2010 (section 4.1).

- Sorting
*Assignment 4*

**Final Exam (Fri Dec 7, Morning)**

## Reading Portions

- Parallel architecture – Grama et al. – 2.4, Many-core – Google for NVIDIA Kepler white paper
- Parallelization principles – Grama et al. – 3.1, 3.5, 5.1-5.6; Culler and Singh – 2.2, 2.3
- OpenMP tutorial: http://www.llnl.gov/computing/tutorials/openMP

## Assignments

**Assignment 1****Assignment 2 (150 points)**

~~Part A: Matrix operations (v1)~~~~,~~*posted online on 18 Sep, 2018*- Part A: Matrix operations (v2)
*Updated with Sample Code and submission instructions on 25 Sep, 2018.**Test datasets available in the course mailing list.***Due on 7 OCT, 2018, 11:59PM.**

- Part B: Searching (v1),
*posted online on 25 Sep, 2018***Due on 14 OCT, 2018, 11:59PM.**

**Assignment 3**

**Assignment 4**[Posted on November 14, Due: December 21. Points: 20]- Assignment Link
- Turing cluster notes on OpenMP and MPI for the assignment

## Mid-Term Answer Keys

**Midterm 1****Midterm**